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data race between lock free list reads and heapq #135557

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Closed
data race between lock free list reads and heapq#135557
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kumaraditya303
Labels
extension-modulesC modules in the Modules dirtopic-free-threadingtype-bugAn unexpected behavior, bug, or error

Description

@kumaraditya303
kumaraditya303
opened on Jun 16, 2025

Reproducer:

import heapq

l = []


def writer():
    while True:
        heapq.heappush(l, 1)
        heapq.heappop(l)

def reader():
    while True:
        try:
            l[0]
        except IndexError:
            pass

def main():
    import threading

    threads = []
    for _ in range(10):
        t1 = threading.Thread(target=writer)
        t2 = threading.Thread(target=reader)
        threads.append(t1)
        threads.append(t2)
        t1.start()
        t2.start()

    for t in threads:
        t.join()

main()

TSAN data race on current main:

==================
WARNING: ThreadSanitizer: data race (pid=32935)
  Write of size 8 at 0x7f90240300f8 by thread T3:
    #0 PyList_SET_ITEM /home/realkumaraditya/cpython/./Include/cpython/listobject.h:47:26 (_heapq.cpython-315t-x86_64-linux-gnu.so+0x43fc) (BuildId: d2d0e185522b78f855f3798fbcc693ee0dba06e3)
    #1 heappop_internal /home/realkumaraditya/cpython/./Modules/_heapqmodule.c:175:5 (_heapq.cpython-315t-x86_64-linux-gnu.so+0x43fc)
    #2 _heapq_heappop_impl /home/realkumaraditya/cpython/./Modules/_heapqmodule.c:197:12 (_heapq.cpython-315t-x86_64-linux-gnu.so+0x2ae7) (BuildId: d2d0e185522b78f855f3798fbcc693ee0dba06e3)
    #3 _heapq_heappop /home/realkumaraditya/cpython/./Modules/clinic/_heapqmodule.c.h:68:20 (_heapq.cpython-315t-x86_64-linux-gnu.so+0x2ae7)
    #4 cfunction_vectorcall_O /home/realkumaraditya/cpython/Objects/methodobject.c:537:24 (python+0x2a2d0a) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #5 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x1f61b3) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #6 PyObject_Vectorcall /home/realkumaraditya/cpython/Objects/call.c:327:12 (python+0x1f61b3)
    #7 _PyEval_EvalFrameDefault /home/realkumaraditya/cpython/Python/generated_cases.c.h:1629:35 (python+0x404042) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #8 _PyEval_EvalFrame /home/realkumaraditya/cpython/./Include/internal/pycore_ceval.h:119:16 (python+0x3ff030) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #9 _PyEval_Vector /home/realkumaraditya/cpython/Python/ceval.c:1975:12 (python+0x3ff030)
    #10 _PyFunction_Vectorcall /home/realkumaraditya/cpython/Objects/call.c (python+0x1f680f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #11 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x1fb226) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #12 method_vectorcall /home/realkumaraditya/cpython/Objects/classobject.c:72:20 (python+0x1fb226)
    #13 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x457ac1) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #14 context_run /home/realkumaraditya/cpython/Python/context.c:728:29 (python+0x457ac1)
    #15 method_vectorcall_FASTCALL_KEYWORDS /home/realkumaraditya/cpython/Objects/descrobject.c:421:24 (python+0x20f499) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #16 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x1f61b3) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #17 PyObject_Vectorcall /home/realkumaraditya/cpython/Objects/call.c:327:12 (python+0x1f61b3)
    #18 _PyEval_EvalFrameDefault /home/realkumaraditya/cpython/Python/generated_cases.c.h:1629:35 (python+0x404042) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #19 _PyEval_EvalFrame /home/realkumaraditya/cpython/./Include/internal/pycore_ceval.h:119:16 (python+0x3ff030) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #20 _PyEval_Vector /home/realkumaraditya/cpython/Python/ceval.c:1975:12 (python+0x3ff030)
    #21 _PyFunction_Vectorcall /home/realkumaraditya/cpython/Objects/call.c (python+0x1f680f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #22 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x1fb226) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #23 method_vectorcall /home/realkumaraditya/cpython/Objects/classobject.c:72:20 (python+0x1fb226)
    #24 _PyVectorcall_Call /home/realkumaraditya/cpython/Objects/call.c:273:16 (python+0x1f64a9) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #25 _PyObject_Call /home/realkumaraditya/cpython/Objects/call.c:348:16 (python+0x1f64a9)
    #26 PyObject_Call /home/realkumaraditya/cpython/Objects/call.c:373:12 (python+0x1f6515) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #27 thread_run /home/realkumaraditya/cpython/./Modules/_threadmodule.c:373:21 (python+0x5ad102) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #28 pythread_wrapper /home/realkumaraditya/cpython/Python/thread_pthread.h:232:5 (python+0x5047c7) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)

  Previous atomic read of size 8 at 0x7f90240300f8 by thread T2:
    #0 _Py_atomic_load_ptr /home/realkumaraditya/cpython/./Include/cpython/pyatomic_gcc.h:300:18 (python+0x24bbb8) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #1 _Py_TryXGetRef /home/realkumaraditya/cpython/./Include/internal/pycore_object.h:632:23 (python+0x24bbb8)
    #2 list_get_item_ref /home/realkumaraditya/cpython/Objects/listobject.c:366:22 (python+0x24bbb8)
    #3 _PyList_GetItemRef /home/realkumaraditya/cpython/Objects/listobject.c:417:12 (python+0x24bd1e) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #4 _PyEval_EvalFrameDefault /home/realkumaraditya/cpython/Python/generated_cases.c.h:736:35 (python+0x401216) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #5 _PyEval_EvalFrame /home/realkumaraditya/cpython/./Include/internal/pycore_ceval.h:119:16 (python+0x3ff030) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #6 _PyEval_Vector /home/realkumaraditya/cpython/Python/ceval.c:1975:12 (python+0x3ff030)
    #7 _PyFunction_Vectorcall /home/realkumaraditya/cpython/Objects/call.c (python+0x1f680f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #8 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x1fb226) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #9 method_vectorcall /home/realkumaraditya/cpython/Objects/classobject.c:72:20 (python+0x1fb226)
    #10 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x457ac1) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #11 context_run /home/realkumaraditya/cpython/Python/context.c:728:29 (python+0x457ac1)
    #12 method_vectorcall_FASTCALL_KEYWORDS /home/realkumaraditya/cpython/Objects/descrobject.c:421:24 (python+0x20f499) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #13 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x1f61b3) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #14 PyObject_Vectorcall /home/realkumaraditya/cpython/Objects/call.c:327:12 (python+0x1f61b3)
    #15 _PyEval_EvalFrameDefault /home/realkumaraditya/cpython/Python/generated_cases.c.h:1629:35 (python+0x404042) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #16 _PyEval_EvalFrame /home/realkumaraditya/cpython/./Include/internal/pycore_ceval.h:119:16 (python+0x3ff030) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #17 _PyEval_Vector /home/realkumaraditya/cpython/Python/ceval.c:1975:12 (python+0x3ff030)
    #18 _PyFunction_Vectorcall /home/realkumaraditya/cpython/Objects/call.c (python+0x1f680f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #19 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:169:11 (python+0x1fb226) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #20 method_vectorcall /home/realkumaraditya/cpython/Objects/classobject.c:72:20 (python+0x1fb226)
    #21 _PyVectorcall_Call /home/realkumaraditya/cpython/Objects/call.c:273:16 (python+0x1f64a9) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #22 _PyObject_Call /home/realkumaraditya/cpython/Objects/call.c:348:16 (python+0x1f64a9)
    #23 PyObject_Call /home/realkumaraditya/cpython/Objects/call.c:373:12 (python+0x1f6515) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #24 thread_run /home/realkumaraditya/cpython/./Modules/_threadmodule.c:373:21 (python+0x5ad102) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #25 pythread_wrapper /home/realkumaraditya/cpython/Python/thread_pthread.h:232:5 (python+0x5047c7) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)

  Thread T3 'Thread-3 (push)' (tid=32945, running) created by main thread at:
    #0 pthread_create <null> (python+0xe21ef) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #1 do_start_joinable_thread /home/realkumaraditya/cpython/Python/thread_pthread.h:279:14 (python+0x5038a8) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #2 PyThread_start_joinable_thread /home/realkumaraditya/cpython/Python/thread_pthread.h:321:9 (python+0x5036ca) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #3 ThreadHandle_start /home/realkumaraditya/cpython/./Modules/_threadmodule.c:459:9 (python+0x5acc97) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #4 do_start_new_thread /home/realkumaraditya/cpython/./Modules/_threadmodule.c:1869:9 (python+0x5acc97)
    #5 thread_PyThread_start_joinable_thread /home/realkumaraditya/cpython/./Modules/_threadmodule.c:1984:14 (python+0x5aba61) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #6 cfunction_call /home/realkumaraditya/cpython/Objects/methodobject.c:565:18 (python+0x2a34f7) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #7 _PyObject_MakeTpCall /home/realkumaraditya/cpython/Objects/call.c:242:18 (python+0x1f5661) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #8 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:167:16 (python+0x1f6271) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #9 PyObject_Vectorcall /home/realkumaraditya/cpython/Objects/call.c:327:12 (python+0x1f6271)
    #10 _PyEval_EvalFrameDefault /home/realkumaraditya/cpython/Python/generated_cases.c.h:3245:35 (python+0x40a1e0) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #11 _PyEval_EvalFrame /home/realkumaraditya/cpython/./Include/internal/pycore_ceval.h:119:16 (python+0x3feb6f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #12 _PyEval_Vector /home/realkumaraditya/cpython/Python/ceval.c:1975:12 (python+0x3feb6f)
    #13 PyEval_EvalCode /home/realkumaraditya/cpython/Python/ceval.c:866:21 (python+0x3feb6f)
    #14 run_eval_code_obj /home/realkumaraditya/cpython/Python/pythonrun.c:1365:12 (python+0x4e12dc) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #15 run_mod /home/realkumaraditya/cpython/Python/pythonrun.c:1436:19 (python+0x4e12dc)
    #16 pyrun_file /home/realkumaraditya/cpython/Python/pythonrun.c:1293:15 (python+0x4dc83e) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #17 _PyRun_SimpleFileObject /home/realkumaraditya/cpython/Python/pythonrun.c:521:13 (python+0x4dc83e)
    #18 _PyRun_AnyFileObject /home/realkumaraditya/cpython/Python/pythonrun.c:81:15 (python+0x4dbf98) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #19 pymain_run_file_obj /home/realkumaraditya/cpython/Modules/main.c:410:15 (python+0x52215f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #20 pymain_run_file /home/realkumaraditya/cpython/Modules/main.c:429:15 (python+0x52215f)
    #21 pymain_run_python /home/realkumaraditya/cpython/Modules/main.c:691:21 (python+0x521488) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #22 Py_RunMain /home/realkumaraditya/cpython/Modules/main.c:772:5 (python+0x521488)
    #23 pymain_main /home/realkumaraditya/cpython/Modules/main.c:802:12 (python+0x5219f8) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #24 Py_BytesMain /home/realkumaraditya/cpython/Modules/main.c:826:12 (python+0x521a7b) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #25 main /home/realkumaraditya/cpython/./Programs/python.c:15:12 (python+0x1607fb) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)

  Thread T2 'Thread-2 (pop)' (tid=32944, running) created by main thread at:
    #0 pthread_create <null> (python+0xe21ef) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #1 do_start_joinable_thread /home/realkumaraditya/cpython/Python/thread_pthread.h:279:14 (python+0x5038a8) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #2 PyThread_start_joinable_thread /home/realkumaraditya/cpython/Python/thread_pthread.h:321:9 (python+0x5036ca) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #3 ThreadHandle_start /home/realkumaraditya/cpython/./Modules/_threadmodule.c:459:9 (python+0x5acc97) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #4 do_start_new_thread /home/realkumaraditya/cpython/./Modules/_threadmodule.c:1869:9 (python+0x5acc97)
    #5 thread_PyThread_start_joinable_thread /home/realkumaraditya/cpython/./Modules/_threadmodule.c:1984:14 (python+0x5aba61) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #6 cfunction_call /home/realkumaraditya/cpython/Objects/methodobject.c:565:18 (python+0x2a34f7) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #7 _PyObject_MakeTpCall /home/realkumaraditya/cpython/Objects/call.c:242:18 (python+0x1f5661) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #8 _PyObject_VectorcallTstate /home/realkumaraditya/cpython/./Include/internal/pycore_call.h:167:16 (python+0x1f6271) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #9 PyObject_Vectorcall /home/realkumaraditya/cpython/Objects/call.c:327:12 (python+0x1f6271)
    #10 _PyEval_EvalFrameDefault /home/realkumaraditya/cpython/Python/generated_cases.c.h:3245:35 (python+0x40a1e0) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #11 _PyEval_EvalFrame /home/realkumaraditya/cpython/./Include/internal/pycore_ceval.h:119:16 (python+0x3feb6f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #12 _PyEval_Vector /home/realkumaraditya/cpython/Python/ceval.c:1975:12 (python+0x3feb6f)
    #13 PyEval_EvalCode /home/realkumaraditya/cpython/Python/ceval.c:866:21 (python+0x3feb6f)
    #14 run_eval_code_obj /home/realkumaraditya/cpython/Python/pythonrun.c:1365:12 (python+0x4e12dc) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #15 run_mod /home/realkumaraditya/cpython/Python/pythonrun.c:1436:19 (python+0x4e12dc)
    #16 pyrun_file /home/realkumaraditya/cpython/Python/pythonrun.c:1293:15 (python+0x4dc83e) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #17 _PyRun_SimpleFileObject /home/realkumaraditya/cpython/Python/pythonrun.c:521:13 (python+0x4dc83e)
    #18 _PyRun_AnyFileObject /home/realkumaraditya/cpython/Python/pythonrun.c:81:15 (python+0x4dbf98) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #19 pymain_run_file_obj /home/realkumaraditya/cpython/Modules/main.c:410:15 (python+0x52215f) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #20 pymain_run_file /home/realkumaraditya/cpython/Modules/main.c:429:15 (python+0x52215f)
    #21 pymain_run_python /home/realkumaraditya/cpython/Modules/main.c:691:21 (python+0x521488) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #22 Py_RunMain /home/realkumaraditya/cpython/Modules/main.c:772:5 (python+0x521488)
    #23 pymain_main /home/realkumaraditya/cpython/Modules/main.c:802:12 (python+0x5219f8) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #24 Py_BytesMain /home/realkumaraditya/cpython/Modules/main.c:826:12 (python+0x521a7b) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)
    #25 main /home/realkumaraditya/cpython/./Programs/python.c:15:12 (python+0x1607fb) (BuildId: 957e91b4c4b85547a8053d7d39b3c2228cdefcde)

SUMMARY: ThreadSanitizer: data race /home/realkumaraditya/cpython/./Include/cpython/listobject.h:47:26 in PyList_SET_ITEM
==================

In #135036 the heapq module was made thread safe but it still uses non atomic writes so it races with lock free reads in list.

Linked PRs

Activity

  1. kumaraditya303
    added
    type-bugAn unexpected behavior, bug, or error
    topic-free-threading
    on Jun 16, 2025

  2. kumaraditya303 commented on Jun 17, 2025

    @kumaraditya303
    kumaraditya303
    on Jun 17, 2025
    ContributorAuthor

    I think there are two ways to fix it:

    • use atomic writes which is the simpler approach but will have lesser performance because of atomics
    • set the size of list to 0 before mutating it like its done for list.sort so that lock free reads will get IndexError until the the operation in complete, presumably this will have better perf as no need for atomic writes. This seems better but there is a change in behavior so shouldn't be backported.

    cc @colesbury

  3. colesbury commented on Jun 17, 2025

    @colesbury
    colesbury
    on Jun 17, 2025
    Contributor

    Atomic writes seems like the best approach to me. Relaxed atomics should be fine and won't have any performance difference (compiles to plain stores), but even the overhead of _Py_atomic_store_ssize (seq-cst) is unlikely to be noticeable in this context.

  4. kumaraditya303
    self-assigned this
    on Jun 17, 2025
  5. picnixz
    added
    interpreter-core(Objects, Python, Grammar, and Parser dirs)
    extension-modulesC modules in the Modules dir
    and removed
    interpreter-core(Objects, Python, Grammar, and Parser dirs)
    on Jun 19, 2025
  6. kumaraditya303
    added a commit that references this issue on Jun 21, 2025

    gh-135557: use atomic stores in `heapq` operations in free-threading (#…

    13cac83
  7. miss-islington
    added a commit that references this issue on Jun 21, 2025

    pythongh-135557: use atomic stores in `heapq` operations in free-thre…

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  8. kumaraditya303
    closed this as completedon Jun 21, 2025
  9. kumaraditya303
    added a commit that references this issue on Jun 21, 2025

    [3.14] gh-135557: use atomic stores in `heapq` operations in free-thr…

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  10. Pranjal095
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    pythongh-135557: use atomic stores in `heapq` operations in free-thre…

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  11. taegyunkim
    added a commit that references this issue on Aug 4, 2025

    pythongh-135557: use atomic stores in `heapq` operations in free-thre…

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  12. Agent-Hellboy
    added a commit that references this issue on Aug 19, 2025

    pythongh-135557: use atomic stores in `heapq` operations in free-thre…

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extension-modulesC modules in the Modules dirtopic-free-threadingtype-bugAn unexpected behavior, bug, or error

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