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Error with compute cost matrix when reproducing HDA #1
Description
Dear Authors,
I am trying to run the HDA script on my own dataset. The error comes when I run this code:
M_lin = compute_cost_matrix(Ty,Sy_ss,v=100)
and compute_cost_matrix is defined as:
M=ot.dist(ys.reshape(-1,1),yt.reshape(-1,1),metric=comp_(v))
return M
Then it will report the following:
~/test/lib/python3.7/site-packages/ot/utils.py in dist(x1, x2, metric, p, w)
226 raise NotImplementedError()
227 else:
--> 228 if metric.endswith("minkowski"):
229 return cdist(x1, x2, metric=metric, p=p, w=w)
230 return cdist(x1, x2, metric=metric, w=w)
AttributeError: 'function' object has no attribute 'endswith'
On my local computer I try to edit the utils.py to avoid this error, but I wonder if there is a way to solve that when wrote the script.
Thank you very much for your attention!
Activity
tvayer commentedon Feb 24, 2022
Hello,
I think it is because your "comp_(v)" is a function and in our code it should be a string (the name of the metric as written in the documentation of the cdist function).