Use pretrained ESM-GearNet model to acquire sequence embeddings, like ESM #2

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1. ShallowDream0218 commented on Mar 19, 2024

   

   ShallowDream0218

   on Mar 19, 2024

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   Great work! I am attemptting to use your pretrained ESM-GearNet model to acquire sequence embeddings, similar to the ones from ESM. How can I achieve this?

   Great work! I am attemptting to use your pretrained ESM-GearNet model to acquire sequence embeddings, similar to the ones from ESM. How can I achieve this?

   I want to extract sequence embeddings by using this model . Have you achieved yet?
2. Yangqy-16 commented on Mar 20, 2024

   

   Yangqy-16

   on Mar 20, 2024

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   Same question. It seems that the authors of this work only gave the commands for training from scratch but didn't release the pretrained model. So how can we obtain sequence embeddings from the model without training by ourselves? Seeks for help.
3. ShallowDream0218 commented on Mar 20, 2024

   

   ShallowDream0218

   on Mar 20, 2024

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   Same question. It seems that the authors of this work only gave the commands for training from scratch but didn't release the pretrained model. So how can we obtain sequence embeddings from the model without training by ourselves? Seeks for help.

   What's the result of training from scratch? Isn't it sequence embeddings?
4. Yangqy-16 commented on Mar 21, 2024

   

   Yangqy-16

   on Mar 21, 2024

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   Same question. It seems that the authors of this work only gave the commands for training from scratch but didn't release the pretrained model. So how can we obtain sequence embeddings from the model without training by ourselves? Seeks for help.

   What's the result of training from scratch? Isn't it sequence embeddings?

   Sorry, I don't have the resource (4 A100 GPUs as mentioned in the article) to train from scratch so I don't know the result.