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1. ILTPP ILTPP Public

   Isoform-level translation initiation site predictor

   Jupyter Notebook

2. extract_virus_UTR extract_virus_UTR Public

   This project extracts virus' UTRs from genbank format files.

   Jupyter Notebook

3. Cas-detector Cas-detector Public

   This project uses CNN model to detect and classify Cas protein fragments.

   Jupyter Notebook

4. Cas_mining_pipeline Cas_mining_pipeline Public

   A snakemake pipeline for Cas protein mining from metagenome assembly/protein file/MAG/raw data.

   Shell

5. Contig_extender Contig_extender Public

   Codes to make blastdb for metagenome raw data and to extend contigs.

   Shell

6. NGS_batch_analysis NGS_batch_analysis Public

   This program analizes NGS data parallelly. By specifying a simple mapping table file it automatically does adapter truncation, reads merging, demultiplexing, editing outcome statistics tabulating a…

   Python