Skip to content
@BirolLab

Birol Lab

Bioinformatics Technology Lab

Pinned Loading

  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 15 1

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 118 3

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 43 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 74 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 64 16

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 313 67

Repositories

Showing 10 of 97 repositories
  • btl Public

    🔬 Bioinformatics Technology Lab, BC Cancer Research Institute

    BirolLab/btl's past year of commit activity
    HTML 2 3 0 0 Updated Nov 13, 2026
  • ntSynt-viz Public

    Multi-genome synteny block visualization tool

    BirolLab/ntSynt-viz's past year of commit activity
    HTML 67 GPL-3.0 6 1 1 Updated Nov 12, 2026
  • ntRoot Public

    🌳 Scalable ancestry from genomic data

    BirolLab/ntRoot's past year of commit activity
    Python 15 GPL-3.0 1 1 0 Updated Nov 11, 2026
  • korus Public

    Probabilistic ancestry inference beyond variant calls

    BirolLab/korus's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 10, 2026
  • DynaMIC Public

    Calibrated Detection and Modelling of Antimicrobial Dose Responses

    BirolLab/DynaMIC's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 9, 2026
  • aahash_paper Public

    aaHash repo for manuscript

    BirolLab/aahash_paper's past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Nov 3, 2026
  • aakomp Public

    Fast, alignment-free genome completeness estimator

    BirolLab/aakomp's past year of commit activity
    C++ 6 GPL-3.0 1 0 0 Updated Nov 3, 2026
  • aakomp_paper Public

    figure and data used to generate manuscript figures

    BirolLab/aakomp_paper's past year of commit activity
    R 0 0 0 0 Updated Oct 30, 2026
  • LLM-Clinical-Trial-Annotator Public

    An LLM-based peptide clinical trial annotation tool/workflow.

    BirolLab/LLM-Clinical-Trial-Annotator's past year of commit activity
    Python 1 0 0 0 Updated Oct 29, 2026
  • goldrush Public

    Linear-time de novo Long Read Assembler

    BirolLab/goldrush's past year of commit activity
    C++ 43 GPL-3.0 2 4 2 Updated Oct 28, 2026
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.